Publications

• González Janneth, Pinzón Andrés, Angarita-Rodríguez Andrea, Aristizabal, Andrés, Felipe, Barreto George E., Martín-Jiménez Cynthia. Advances in Astrocyte Computational Models: From Metabolic Reconstructions to Multi-omic Approaches. https://www.frontiersin.org/article/10.3389/fninf.2020.00035. 10.3389/fninf.2020.00035
• Daniel Osorio, Andrés Pinzón, Cynthia Martín-Jiménez, George E. Barreto4 and Janneth González. Multiple Pathways Involved in Palmitic Acid-Induced Toxicity: A System Biology Approach. Front. Neurosci., 2020. doi.org/10.3389/fnins.2019.01410
• Kelly Botero, Silvia Restrepo and Andres Pinzon. A genome-scale metabolic model of potato late blight suggests a photosynthesis suppression mechanism. BMC Genomics 2018, 19(Suppl8):863. 2018.
• Pinzon W, Vega H, Gonzalez J and Pinzon A. Mathematical Framework Behind the Reconstruction and Analysis of Genome Scale Metabolic Models. Archives of Computational Methods in Engineering, 2018.
• Arenas Valencia C, Lopez Kleine L, Pinzon Velasco A and Arteaga Diaz C. Gene expression analysis in peripheral blood cells of patients with hereditary leiomyomatosis and renal cell cancer syndrome (HLRCC): identification of NRF2 pathway activation. Familial Cancer (2018) 17(4) 587-599.
• Osorio, Daniel, González, Janneth and Pinzón, Andrés. minval : An R package for MINimal VALidation of Stoichiometric Reactions. The R Journal (2017) 9(1) 114-123.
• Hernández-Fernández J, Pinzón A and Mariño-Ramírez L. De novo transcriptome assembly of loggerhead sea turtle nesting of the Colombian Caribbean. Genomics Data (2017) 13 18-20.
• Henao J, Pérez H, Abril D, Ospina K, Piza A, Botero K, Rincón C, Donato J, Hurtado A, García E, Otero V, Del Risco A, Guerra B, Cifuentes Y, Ordoñez A, Rojas D, Suarez K, Osorio D and Pinzón A. Genome sequencing of three bacteria associated to black band disease from a Colombian reef-building coral. Genomics Data (2017) 11 73-74.
• López G, Cañas-Duarte S, Pinzón-Velasco A, Vega-Vela N, Rodríguez M, Restrepo S, Baena S. Description of a new anaerobic thermophilic bacterium, Thermoanaerobacterium butyriciformans sp. nov. Systematic and Applied Microbiology (2017) 40(2) 86-91.
• Restrepo L, Bayot B, Betancourt I and Pinzón A. Draft genome sequence of pathogenic bacteria Vibrio parahaemolyticus strain Ba94C2, associated with acute hepatopancreatic necrosis disease isolate from South America. Genomics Data (2016) 9 143-144.
• Martins-de-Souza D, Cassoli J, Nascimento J, Hensley K, Guest P, Pinzon-Velasco A and Turck C. The protein interactome of collapsin response mediator protein-2 (CRMP2/DPYSL2) reveals novel partner proteins in brain tissue. Proteomics - Clinical Applications (2015) 9(9-10) 817-831.
• Zamora M, Pinzón A, Zambrano M, Restrepo S, Broadbelt L, Moura M, Husserl Orjuela J and González Barrios A. A comparison between functional frequency and metabolic flows framed by biogeochemical cycles in metagenomes: The case of “El Coquito” hot spring located at Colombia’s national Nevados park. Ecological Modelling (2015) 313 259-265.
• Liliana López-Kleine & Andrés Torres (2014) UV-vis in situ spectrometry data mining through linear and non linear analysis methods. DYNA 81 (185), pp. 190-196. June, 2014
• Sally Yepes, Maria Mercedes Torres and Liliana López-Kleine (2015). Regulatory network reconstruction reveals genes with prognostic value for chronic lymphocytic leukemia. BMC Genomics. 16:1002 DOI 10.1186/s12864-015-2189-6
• Tovar JR, López-Kleine L,Ordoñez JA (2015) Identification of Global Gene Expression Shifts Using Microarray Data from Different Biological Conditions. Open Journal of Statistics 5:360-372. http://dx.doi.org/10.4236/ojs.2015.55038
• Tamara Sandino, Liliana López-Kleine, Camilo López, Xavier Marquínez (2015) Caracterización de la respuesta morfológica de variedades susceptibles y resistentes de yuca (Manihot esculenta Crantz) a la bacteriosis vascular causada por Xanthomonas axonopodis pv. Manihotis. Summa Phytopathol., Botucatu, v. 41, n. 2, p. 94-100, 2015. 10.1590/0100-5405/2031
• Tovar, J.R., López-Kleine, L. and Ordoñez, J.A. (2015) Identification of Global Gene Expression Shifts Using. Open Journal of Statistics, 2015, 5, 360-372. http://dx.doi.org/10.4236/ojs.2015.55038.
• C. J. Pardo-De la Hoz, C. Calderona, A. M. Rincon, M. Cardenas, G. Daniesa,L. Lopez-Kleine, S. Restrepo and P. Jimenez (2015). Species from the Colletotrichum acutatum, Colletotrichum boninense and Colletotrichum gloeosporioides species complexes associated with tree tomato and mango crops in Colombia. Plant Pathology. Doi: 10.1111/ppa.12410
• Juan Pablo Rosas-Morales, Ximena Perez-Mancilla, Liliana López-Kleine, Dolly Montoya Castaño Diego Mauricio Riaño-Pachón (2015) Draft Genome Sequences of Clostridium Strains Native to Colombia with the Potential To Produce Solvents. Genome Announc. May-Jun; 3(3): e00486-15. doi: 10.1128/genomeA.00486-15
• Yepes S, López R, Andrade RE, Rodriguez-Urrego PA, López-Kleine L, Torres MM (2016). Genomics. Co-expressed miRNAs in gastric adenocarcinoma. 108(2):93-101. doi:10.1016/j.ygeno.2016.07.002. Epub 2016 Jul 13.
• López-Kleine, L. and González-Prieto, C. (2016) Challenges Analyzing RNA-Seq Gene Expression Data. Open Journal of Statistics, 6, 628-636. http://dx.doi.org/10.4236/ojs.2016.64053. http://dx.doi.org/10.4236/ojs.2016.64053
• Liliana López-Kleine, Nathalie Hernández, and Andrés Torres (2016). Physical characteristics of pipes as indicators of structural state for decision-making considerations in sewer asset management. Ing. Investig. vol.36 no.3 Bogotá Sep./Dec. 2016. http://dx.doi.org/10.15446/ing.investig.v36n3.56616
• Liliana Lopez-Kleine, Rosa Montaño, Francisco Torres-Aviles (2017) Functional Prediction: Gene Filtering Based on Multivariate Techniques. Current Bioinformatics. Volume 12, Issue 2 , 2017. DOI:10.2174/1574893610666150601210551
• Luis Carlos Fang-Mercado, Juan Ricardo Urrego-Álvarez, Andrés Ernesto Merlano-Barón, Catherine Meza-Torres, Luz Hernández-Bonfante, Liliana López-Kleine, Javier Marrugo-Cano (2017) Influence of lifestyle, diet and vitamin D on atopy in a population of Afro-descendant Colombian children. Rev Alerg Mex. 2017;64(3):277-290
• Cabrera, Laura & Rojas, Paola & Rojas, Sofía & Pardo-De La Hoz, Carlos & Mideros, Mafe & Danies, Giovanna & Lopez-Kleine, Liliana & Jiménez, Pedro & Restrepo, Silvia. (2018). Most Colletotrichum species associated with tree tomato (Solanum betaceum ) and mango ( Mangifera indica ) crops are not host specific. Plant Pathology. 10.1111/ppa.12829.
• Laura BARACALDO, Luis LEAL, Liliana LOPEZ-KLEINE (2018). THRESHOLD SELECTION BASED ON RANDOM MATRIX THEORY FOR GENE CO-EXPRESSION NETWORK. Rev. Bras. Biom., Lavras, v.36, n.2, p.376-384, 2018 – doi: 10.28951/rbb.v36i2.205
• Fabio Gómez-Cano & Johana Soto & Silvia Restrepo & Adriana Bernal & Liliana López-Kleine & Camilo Ernesto López. (2018) Gene co-expression network for Xanthomonas-challenged cassava reveals key regulatory elements of immunity processes Eur J Plant Pathol https://doi.org/10.1007/s10658-018-01628-4 2018
• Natalia Comba González, María Luna Ramírez Hoyos, Liliana López Kleine, Dolly Montoya Castaño (2018) Production of enzymes and siderophores by epiphytic bacteria isolated from the marine macroalga Ulva lactuca. Vol. 27: 107–118, 2018, https://doi.org/10.3354/ab00700
• Cristian Andrés González Prieto, Liliana López-Kleine (2019) Graphic Model-Based Gene Regulatory Network Reconstruction Using RNA Sequencing Count Data. Journal of Advances in Biotechnology Vol 8 , DOI: https://doi.org/10.24297/jbt.v8i0.8298
• BEATRIZ ANDREA OTÁLORA‑OTÁLORA, BERTA HENRÍQUEZ2, LILIANA LÓPEZ‑KLEINE and ADRIANA ROJAS (2019). RUNX family: Oncogenes or tumor suppressors (Review). Oncology reports DOI: 10.3892/or.2019.7149
• Otálora-Otálora Beatriz Andrea, Florez Mauro, López-Kleine Liliana, Cañas Arboleda Alejandra, Grajales Urrego Diana Marcela, Rojas Adriana (2019 Joint Transcriptomic Analysis of Lung Cancer and Other Lung Diseases, Front Genet. 2019; 10: 1260. doi: 10.3389/fgene.2019.01260